Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 PCED1CP-201ENST00000419887 785 ntBASIC18.92■□□□□ 0.62
SKA1Q96BD8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 NEK4P2-201ENST00000580004 1012 ntBASIC18.92■□□□□ 0.62
SKA1Q96BD8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 IER3-202ENST00000376377 1350 ntBASIC18.92■□□□□ 0.62
SKA1Q96BD8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.92■□□□□ 0.62
SKA1Q96BD8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SKA1Q96BD8 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 AL023973.1-201ENST00000624619 620 ntBASIC18.91■□□□□ 0.62
SKA1Q96BD8 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SKA1Q96BD8 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.91■□□□□ 0.62
SKA1Q96BD8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 AL359075.1-203ENST00000462729 1002 ntBASIC18.9■□□□□ 0.62
SKA1Q96BD8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SKA1Q96BD8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
SKA1Q96BD8 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SKA1Q96BD8 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.89■□□□□ 0.62
SKA1Q96BD8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SKA1Q96BD8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
SKA1Q96BD8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SKA1Q96BD8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms