Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 AC005224.4-201ENST00000583262 1652 ntBASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 ZNF815P-204ENST00000434898 1737 ntBASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 SRD5A1P1-201ENST00000442297 786 ntBASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 AC008175.2-201ENST00000612840 297 ntBASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 PTBP1P-201ENST00000554374 1601 ntBASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN3Q8NCR9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 AC105917.1-201ENST00000506637 2539 ntBASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN3Q8NCR9 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms