Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETREG2Q8NC44 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETREG2Q8NC44 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 AC011498.5-201ENST00000592027 486 ntBASIC20.87■□□□□ 0.93
RETREG2Q8NC44 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 AC024243.1-201ENST00000609234 778 ntBASIC20.87■□□□□ 0.93
RETREG2Q8NC44 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.87■□□□□ 0.93
RETREG2Q8NC44 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
RETREG2Q8NC44 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 MIR3180-5-201ENST00000583743 153 ntBASIC20.86■□□□□ 0.93
RETREG2Q8NC44 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RETREG2Q8NC44 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 RN7SL510P-201ENST00000581311 263 ntBASIC20.85■□□□□ 0.93
RETREG2Q8NC44 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 AC009113.1-201ENST00000570267 2443 ntBASIC20.85■□□□□ 0.93
RETREG2Q8NC44 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.85■□□□□ 0.93
RETREG2Q8NC44 AL512353.2-201ENST00000448759 1962 ntBASIC20.85■□□□□ 0.93
RETREG2Q8NC44 AC036111.1-201ENST00000533973 1582 ntBASIC20.85■□□□□ 0.93
RETREG2Q8NC44 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETREG2Q8NC44 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms