Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 CLEC4GP1-201ENST00000596555 870 ntBASIC28.72■■■□□ 2.19
VPS8Q8N3P4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 AC132938.6-201ENST00000623828 1655 ntBASIC28.72■■■□□ 2.19
VPS8Q8N3P4 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
VPS8Q8N3P4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 AC093010.1-201ENST00000473625 1624 ntBASIC28.71■■■□□ 2.19
VPS8Q8N3P4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 KRT18P56-201ENST00000507275 550 ntBASIC28.71■■■□□ 2.19
VPS8Q8N3P4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 AP005901.3-202ENST00000581653 237 ntBASIC28.71■■■□□ 2.19
VPS8Q8N3P4 AC090616.6-201ENST00000582640 721 ntBASIC28.71■■■□□ 2.19
VPS8Q8N3P4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 GMCL1P1-201ENST00000463439 1581 ntBASIC28.71■■■□□ 2.19
VPS8Q8N3P4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
VPS8Q8N3P4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC28.7■■■□□ 2.19
VPS8Q8N3P4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
VPS8Q8N3P4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC28.7■■■□□ 2.19
VPS8Q8N3P4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC28.7■■■□□ 2.19
VPS8Q8N3P4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC28.7■■■□□ 2.19
VPS8Q8N3P4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
VPS8Q8N3P4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
VPS8Q8N3P4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
VPS8Q8N3P4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC28.7■■■□□ 2.18
VPS8Q8N3P4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
VPS8Q8N3P4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
VPS8Q8N3P4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 TOB2P1-201ENST00000469761 992 ntBASIC28.69■■■□□ 2.18
VPS8Q8N3P4 AC091607.1-201ENST00000490318 1060 ntBASIC28.69■■■□□ 2.18
VPS8Q8N3P4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 AC012313.10-201ENST00000623509 926 ntBASIC28.69■■■□□ 2.18
VPS8Q8N3P4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 KRT18P1-202ENST00000452408 1331 ntBASIC28.69■■■□□ 2.18
VPS8Q8N3P4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC28.69■■■□□ 2.18
VPS8Q8N3P4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC28.69■■■□□ 2.18
VPS8Q8N3P4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC28.69■■■□□ 2.18
VPS8Q8N3P4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC28.68■■■□□ 2.18
VPS8Q8N3P4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS8Q8N3P4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC28.67■■■□□ 2.18
VPS8Q8N3P4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms