Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 AC006333.2-201ENST00000607957 2099 ntBASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 AC112907.2-201ENST00000448639 330 ntBASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 AL671277.2-201ENST00000458060 996 ntBASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 AC083906.6-201ENST00000641366 219 ntBASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.22■□□□□ 0.67
RFWD3Q6PCD5 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 RASA4DP-201ENST00000460726 1199 ntBASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 Z98044.1-201ENST00000632503 1764 ntBASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 AC034236.2-201ENST00000606662 1610 ntBASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFWD3Q6PCD5 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 HYMAI.1-201ENST00000620949 238 ntBASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFWD3Q6PCD5 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms