Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 HLA-J-201ENST00000462773 1622 ntBASIC23.16■■□□□ 1.3
RC3H1Q5TC82 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 NMU-202ENST00000505262 693 ntTSL 3 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AC012640.2-201ENST00000561606 901 ntBASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AL691403.2-201ENST00000618460 490 ntBASIC23.16■■□□□ 1.3
RC3H1Q5TC82 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RC3H1Q5TC82 AL356309.3-201ENST00000624132 1934 ntBASIC23.16■■□□□ 1.3
RC3H1Q5TC82 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 AC098831.1-202ENST00000438821 336 ntBASIC23.15■■□□□ 1.3
RC3H1Q5TC82 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RC3H1Q5TC82 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC23.14■■□□□ 1.3
RC3H1Q5TC82 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC23.14■■□□□ 1.3
RC3H1Q5TC82 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
RC3H1Q5TC82 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RC3H1Q5TC82 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.14■■□□□ 1.3
RC3H1Q5TC82 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RC3H1Q5TC82 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 RPSAP43-201ENST00000402237 625 ntBASIC23.14■■□□□ 1.29
RC3H1Q5TC82 MED15P5-201ENST00000423150 992 ntBASIC23.14■■□□□ 1.29
RC3H1Q5TC82 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 OR7E14P-202ENST00000530490 1290 ntBASIC23.14■■□□□ 1.29
RC3H1Q5TC82 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 AC025062.2-201ENST00000605477 670 ntBASIC23.14■■□□□ 1.29
RC3H1Q5TC82 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RC3H1Q5TC82 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 RAB17-203ENST00000409576 466 ntTSL 3 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 RNA5SP415-201ENST00000517246 115 ntBASIC23.13■■□□□ 1.29
RC3H1Q5TC82 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 Z83851.2-201ENST00000609564 659 ntBASIC23.13■■□□□ 1.29
RC3H1Q5TC82 AC008735.5-201ENST00000623544 497 ntBASIC23.13■■□□□ 1.29
RC3H1Q5TC82 AC083906.6-201ENST00000641366 219 ntBASIC23.13■■□□□ 1.29
RC3H1Q5TC82 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RC3H1Q5TC82 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms