Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 RNA5SP415-201ENST00000517246 115 ntBASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CCDC88AQ3V6T2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 SART3-203ENST00000546611 1184 ntBASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 METTL21AP1-201ENST00000438852 635 ntBASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 KRT18P41-201ENST00000518924 1277 ntBASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 Z83851.2-201ENST00000609564 659 ntBASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC88AQ3V6T2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 AP001269.4-201ENST00000609611 512 ntBASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC88AQ3V6T2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 THAP5-204ENST00000438865 868 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 AC021087.4-201ENST00000563761 564 ntBASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 AC068587.9-201ENST00000641814 219 ntBASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 Z98044.1-201ENST00000632503 1764 ntBASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 RPS2P1-201ENST00000434010 821 ntBASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.49■■□□□ 1.19
CCDC88AQ3V6T2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 DDT-203ENST00000403754 569 ntTSL 3 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 AC004967.1-201ENST00000453589 447 ntBASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 OR7E14P-202ENST00000530490 1290 ntBASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms