Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL28A1Q2UY09 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL28A1Q2UY09 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 LINC00167-201ENST00000530583 1419 ntBASIC17.7■□□□□ 0.42
COL28A1Q2UY09 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL28A1Q2UY09 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 TNXA-203ENST00000507684 2038 ntBASIC17.69■□□□□ 0.42
COL28A1Q2UY09 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 KRT8P41-201ENST00000533985 1514 ntBASIC17.69■□□□□ 0.42
COL28A1Q2UY09 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.69■□□□□ 0.42
COL28A1Q2UY09 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 ZNF815P-204ENST00000434898 1737 ntBASIC17.69■□□□□ 0.42
COL28A1Q2UY09 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL28A1Q2UY09 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 AL031284.1-201ENST00000419297 478 ntBASIC17.68■□□□□ 0.42
COL28A1Q2UY09 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 AF238378.1-201ENST00000526806 358 ntBASIC17.68■□□□□ 0.42
COL28A1Q2UY09 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.68■□□□□ 0.42
COL28A1Q2UY09 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL28A1Q2UY09 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms