Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.16□□□□□ -0.3
COL7A1Q02388 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 LINC01006-201ENST00000333319 2292 ntBASIC13.15□□□□□ -0.3
COL7A1Q02388 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 AC009947.1-201ENST00000444350 727 ntBASIC13.15□□□□□ -0.3
COL7A1Q02388 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.15□□□□□ -0.3
COL7A1Q02388 AL356309.3-201ENST00000624132 1934 ntBASIC13.15□□□□□ -0.3
COL7A1Q02388 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC13.15□□□□□ -0.3
COL7A1Q02388 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
COL7A1Q02388 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
COL7A1Q02388 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.15□□□□□ -0.3
COL7A1Q02388 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.15□□□□□ -0.3
COL7A1Q02388 AC092910.1-201ENST00000482027 1129 ntBASIC13.15□□□□□ -0.3
COL7A1Q02388 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL7A1Q02388 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 AL078644.1-201ENST00000609881 752 ntBASIC13.15□□□□□ -0.3
COL7A1Q02388 C20orf181-201ENST00000623918 480 ntBASIC13.15□□□□□ -0.3
COL7A1Q02388 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC13.15□□□□□ -0.3
COL7A1Q02388 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL7A1Q02388 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
COL7A1Q02388 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
COL7A1Q02388 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.14□□□□□ -0.31
COL7A1Q02388 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.14□□□□□ -0.31
COL7A1Q02388 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 ADK-206ENST00000541550 2222 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL7A1Q02388 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.14□□□□□ -0.31
COL7A1Q02388 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.14□□□□□ -0.31
COL7A1Q02388 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.14□□□□□ -0.31
COL7A1Q02388 AP002472.1-201ENST00000577490 586 ntBASIC13.14□□□□□ -0.31
COL7A1Q02388 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.14□□□□□ -0.31
COL7A1Q02388 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 USP48-205ENST00000421625 2818 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 KRT8P50-201ENST00000562022 1438 ntBASIC13.14□□□□□ -0.31
COL7A1Q02388 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.14□□□□□ -0.31
COL7A1Q02388 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC13.14□□□□□ -0.31
COL7A1Q02388 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC13.13□□□□□ -0.31
COL7A1Q02388 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.13□□□□□ -0.31
COL7A1Q02388 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.13□□□□□ -0.31
COL7A1Q02388 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.13□□□□□ -0.31
COL7A1Q02388 AC092364.2-202ENST00000597012 1073 ntBASIC13.13□□□□□ -0.31
COL7A1Q02388 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.13□□□□□ -0.31
COL7A1Q02388 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.13□□□□□ -0.31
COL7A1Q02388 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 COX20P2-201ENST00000452636 358 ntBASIC13.13□□□□□ -0.31
COL7A1Q02388 MIR1199-201ENST00000621445 119 ntBASIC13.13□□□□□ -0.31
COL7A1Q02388 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.13□□□□□ -0.31
COL7A1Q02388 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL7A1Q02388 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC13.13□□□□□ -0.31
COL7A1Q02388 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC13.13□□□□□ -0.31
COL7A1Q02388 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms