Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 CD99-202ENST00000381180 530 ntTSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC11.38□□□□□ -0.59
HSPG2P98160 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 CTNS-203ENST00000399306 803 ntTSL 3 BASIC11.38□□□□□ -0.59
HSPG2P98160 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 ETFA-208ENST00000559602 792 ntTSL 3 BASIC11.38□□□□□ -0.59
HSPG2P98160 AC073592.4-201ENST00000623827 446 ntBASIC11.38□□□□□ -0.59
HSPG2P98160 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC11.37□□□□□ -0.59
HSPG2P98160 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC11.37□□□□□ -0.59
HSPG2P98160 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC11.37□□□□□ -0.59
HSPG2P98160 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 ENSA-205ENST00000361532 792 ntTSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC11.37□□□□□ -0.59
HSPG2P98160 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC11.37□□□□□ -0.59
HSPG2P98160 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 AC018845.2-201ENST00000568326 409 ntBASIC11.37□□□□□ -0.59
HSPG2P98160 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 AQP6-205ENST00000618286 829 ntTSL 5 BASIC11.37□□□□□ -0.59
HSPG2P98160 AL513210.1-201ENST00000629608 234 ntBASIC11.37□□□□□ -0.59
HSPG2P98160 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
HSPG2P98160 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 HLA-DRB6-201ENST00000411500 1235 ntBASIC11.37□□□□□ -0.59
HSPG2P98160 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC11.37□□□□□ -0.59
HSPG2P98160 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 AC005593.1-201ENST00000624894 515 ntBASIC11.37□□□□□ -0.59
HSPG2P98160 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HSPG2P98160 AC015911.4-201ENST00000588022 1070 ntBASIC11.37□□□□□ -0.59
HSPG2P98160 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
HSPG2P98160 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
HSPG2P98160 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC11.36□□□□□ -0.59
HSPG2P98160 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 AC023141.5-201ENST00000458585 616 ntBASIC11.36□□□□□ -0.59
HSPG2P98160 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 DUT-210ENST00000559935 569 ntTSL 3 BASIC11.36□□□□□ -0.59
HSPG2P98160 AC093520.2-201ENST00000561830 333 ntBASIC11.36□□□□□ -0.59
HSPG2P98160 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.36□□□□□ -0.59
HSPG2P98160 AC073592.5-201ENST00000624854 528 ntBASIC11.36□□□□□ -0.59
HSPG2P98160 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
HSPG2P98160 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC11.36□□□□□ -0.59
HSPG2P98160 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC11.36□□□□□ -0.59
HSPG2P98160 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC11.36□□□□□ -0.59
HSPG2P98160 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC11.36□□□□□ -0.59
HSPG2P98160 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC11.36□□□□□ -0.59
HSPG2P98160 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 AC073314.1-201ENST00000568729 2216 ntBASIC11.36□□□□□ -0.59
HSPG2P98160 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.36□□□□□ -0.59
HSPG2P98160 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC11.36□□□□□ -0.59
HSPG2P98160 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms