Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.27■□□□□ 0.68
HDAC4P56524 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.27■□□□□ 0.68
HDAC4P56524 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.27■□□□□ 0.68
HDAC4P56524 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HDAC4P56524 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.27■□□□□ 0.67
HDAC4P56524 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HDAC4P56524 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.26■□□□□ 0.67
HDAC4P56524 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
HDAC4P56524 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.26■□□□□ 0.67
HDAC4P56524 AC104390.1-201ENST00000555663 520 ntBASIC19.26■□□□□ 0.67
HDAC4P56524 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.26■□□□□ 0.67
HDAC4P56524 NEK4P2-201ENST00000580004 1012 ntBASIC19.26■□□□□ 0.67
HDAC4P56524 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 AC005363.2-201ENST00000618631 242 ntBASIC19.26■□□□□ 0.67
HDAC4P56524 AC141257.4-201ENST00000634557 245 ntBASIC19.26■□□□□ 0.67
HDAC4P56524 AC136944.6-201ENST00000634818 245 ntBASIC19.26■□□□□ 0.67
HDAC4P56524 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
HDAC4P56524 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.26■□□□□ 0.67
HDAC4P56524 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDAC4P56524 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HDAC4P56524 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HDAC4P56524 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 AC073508.3-201ENST00000619697 1419 ntBASIC19.25■□□□□ 0.67
HDAC4P56524 AL163051.1-201ENST00000569214 1512 ntBASIC19.25■□□□□ 0.67
HDAC4P56524 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.25■□□□□ 0.67
HDAC4P56524 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HDAC4P56524 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.25■□□□□ 0.67
HDAC4P56524 TERF1P1-201ENST00000311003 1181 ntBASIC19.25■□□□□ 0.67
HDAC4P56524 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.25■□□□□ 0.67
HDAC4P56524 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 SEC1P-202ENST00000473944 940 ntBASIC19.25■□□□□ 0.67
HDAC4P56524 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.25■□□□□ 0.67
HDAC4P56524 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.25■□□□□ 0.67
HDAC4P56524 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.25■□□□□ 0.67
HDAC4P56524 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.25■□□□□ 0.67
HDAC4P56524 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDAC4P56524 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HDAC4P56524 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HDAC4P56524 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms