Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 PRSS29P-201ENST00000440800 595 ntBASIC21.32■■□□□ 1
CTCFP49711 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.32■■□□□ 1
CTCFP49711 DUX4L17-201ENST00000557360 1267 ntBASIC21.32■■□□□ 1
CTCFP49711 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.32■■□□□ 1
CTCFP49711 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
CTCFP49711 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.32■■□□□ 1
CTCFP49711 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.32■■□□□ 1
CTCFP49711 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.31■■□□□ 1
CTCFP49711 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 GABARAPL3-202ENST00000624044 1851 ntBASIC21.31■■□□□ 1
CTCFP49711 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.31■■□□□ 1
CTCFP49711 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.31■■□□□ 1
CTCFP49711 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.31■■□□□ 1
CTCFP49711 AC015922.1-201ENST00000421102 1152 ntBASIC21.31■■□□□ 1
CTCFP49711 AC009947.1-201ENST00000444350 727 ntBASIC21.31■■□□□ 1
CTCFP49711 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.31■■□□□ 1
CTCFP49711 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
CTCFP49711 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.31■■□□□ 1
CTCFP49711 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.31■■□□□ 1
CTCFP49711 AC064836.3-201ENST00000607928 673 ntBASIC21.31■■□□□ 1
CTCFP49711 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CTCFP49711 AC093028.1-201ENST00000622998 982 ntBASIC21.31■■□□□ 1
CTCFP49711 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTCFP49711 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.31■■□□□ 1
CTCFP49711 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CTCFP49711 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CTCFP49711 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.3■■□□□ 1
CTCFP49711 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CTCFP49711 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 TP73-AS1-210ENST00000637775 1455 ntBASIC21.3■■□□□ 1
CTCFP49711 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CTCFP49711 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.3■■□□□ 1
CTCFP49711 AC007952.6-201ENST00000573168 2673 ntBASIC21.3■■□□□ 1
CTCFP49711 AC003957.1-201ENST00000625108 2673 ntBASIC21.3■■□□□ 1
CTCFP49711 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTCFP49711 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.29■■□□□ 1
CTCFP49711 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.29■■□□□ 1
CTCFP49711 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.29■■□□□ 1
CTCFP49711 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.29■■□□□ 1
CTCFP49711 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.29■■□□□ 1
CTCFP49711 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.29■■□□□ 1
CTCFP49711 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.29■■□□□ 1
CTCFP49711 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.29■■□□□ 1
CTCFP49711 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CTCFP49711 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.29■■□□□ 1
CTCFP49711 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.29■■□□□ 1
CTCFP49711 AC012645.4-201ENST00000610691 1061 ntBASIC21.29■■□□□ 1
CTCFP49711 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CTCFP49711 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.29■■□□□ 1
CTCFP49711 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.29■■□□□ 1
CTCFP49711 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.28■■□□□ 1
CTCFP49711 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.28■■□□□ 1
CTCFP49711 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CTCFP49711 FP700111.2-201ENST00000619190 1892 ntBASIC21.28■■□□□ 1
CTCFP49711 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
CTCFP49711 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CTCFP49711 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CTCFP49711 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CTCFP49711 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.28■■□□□ 1
CTCFP49711 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.28■■□□□ 1
CTCFP49711 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.28■■□□□ 1
CTCFP49711 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CTCFP49711 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.28■■□□□ 1
CTCFP49711 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms