Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP002472.1-201ENST00000577490 586 ntBASIC21.75■■□□□ 1.07
SCN4AP35499 AC009154.2-201ENST00000621177 724 ntBASIC21.75■■□□□ 1.07
SCN4AP35499 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.75■■□□□ 1.07
SCN4AP35499 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.75■■□□□ 1.07
SCN4AP35499 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 HEIH-201ENST00000623091 1652 ntBASIC21.75■■□□□ 1.07
SCN4AP35499 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.74■■□□□ 1.07
SCN4AP35499 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.74■■□□□ 1.07
SCN4AP35499 MIR149-201ENST00000384879 89 ntBASIC21.74■■□□□ 1.07
SCN4AP35499 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.74■■□□□ 1.07
SCN4AP35499 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.74■■□□□ 1.07
SCN4AP35499 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.74■■□□□ 1.07
SCN4AP35499 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.74■■□□□ 1.07
SCN4AP35499 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
SCN4AP35499 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 AL163051.1-201ENST00000569214 1512 ntBASIC21.74■■□□□ 1.07
SCN4AP35499 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.74■■□□□ 1.07
SCN4AP35499 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SCN4AP35499 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.73■■□□□ 1.07
SCN4AP35499 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 MTCL1P1-201ENST00000446207 792 ntBASIC21.73■■□□□ 1.07
SCN4AP35499 KRT18P2-201ENST00000447938 1258 ntBASIC21.73■■□□□ 1.07
SCN4AP35499 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 MIR4469-201ENST00000583919 79 ntBASIC21.73■■□□□ 1.07
SCN4AP35499 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
SCN4AP35499 AC097374.2-201ENST00000618617 1306 ntBASIC21.73■■□□□ 1.07
SCN4AP35499 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.73■■□□□ 1.07
SCN4AP35499 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SCN4AP35499 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SCN4AP35499 AL096865.1-201ENST00000606796 927 ntBASIC21.73■■□□□ 1.07
SCN4AP35499 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCN4AP35499 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.73■■□□□ 1.07
SCN4AP35499 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SCN4AP35499 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SCN4AP35499 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.72■■□□□ 1.07
SCN4AP35499 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 TSEN15P1-201ENST00000423257 515 ntBASIC21.72■■□□□ 1.07
SCN4AP35499 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.72■■□□□ 1.07
SCN4AP35499 AC006557.2-201ENST00000592985 1240 ntBASIC21.72■■□□□ 1.07
SCN4AP35499 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC21.72■■□□□ 1.07
SCN4AP35499 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.72■■□□□ 1.07
SCN4AP35499 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCN4AP35499 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.71■■□□□ 1.07
SCN4AP35499 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
SCN4AP35499 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 AC244107.1-201ENST00000442033 332 ntBASIC21.71■■□□□ 1.07
SCN4AP35499 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC21.71■■□□□ 1.07
SCN4AP35499 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.71■■□□□ 1.07
SCN4AP35499 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.71■■□□□ 1.07
SCN4AP35499 C20orf181-201ENST00000623918 480 ntBASIC21.71■■□□□ 1.07
SCN4AP35499 ELL2P1-201ENST00000413990 1906 ntBASIC21.71■■□□□ 1.07
SCN4AP35499 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms