Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
SMARCA1P28370 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.13■□□□□ 0.97
SMARCA1P28370 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.13■□□□□ 0.97
SMARCA1P28370 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.13■□□□□ 0.97
SMARCA1P28370 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SMARCA1P28370 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.13■□□□□ 0.97
SMARCA1P28370 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.13■□□□□ 0.97
SMARCA1P28370 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SMARCA1P28370 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.13■□□□□ 0.97
SMARCA1P28370 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.13■□□□□ 0.97
SMARCA1P28370 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SMARCA1P28370 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
SMARCA1P28370 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SMARCA1P28370 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.12■□□□□ 0.97
SMARCA1P28370 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SMARCA1P28370 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.12■□□□□ 0.97
SMARCA1P28370 RNF126P1-202ENST00000569893 925 ntBASIC21.12■□□□□ 0.97
SMARCA1P28370 AC005332.3-201ENST00000589904 676 ntBASIC21.12■□□□□ 0.97
SMARCA1P28370 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SMARCA1P28370 GPR32P1-201ENST00000601788 811 ntBASIC21.12■□□□□ 0.97
SMARCA1P28370 AL390719.2-201ENST00000606993 987 ntBASIC21.12■□□□□ 0.97
SMARCA1P28370 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.12■□□□□ 0.97
SMARCA1P28370 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SMARCA1P28370 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.12■□□□□ 0.97
SMARCA1P28370 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.12■□□□□ 0.97
SMARCA1P28370 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMARCA1P28370 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.11■□□□□ 0.97
SMARCA1P28370 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.11■□□□□ 0.97
SMARCA1P28370 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.11■□□□□ 0.97
SMARCA1P28370 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SMARCA1P28370 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.11■□□□□ 0.97
SMARCA1P28370 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.11■□□□□ 0.97
SMARCA1P28370 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMARCA1P28370 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SMARCA1P28370 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SMARCA1P28370 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.1■□□□□ 0.97
SMARCA1P28370 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.1■□□□□ 0.97
SMARCA1P28370 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.1■□□□□ 0.97
SMARCA1P28370 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.1■□□□□ 0.97
SMARCA1P28370 KRT8P26-201ENST00000534154 1276 ntBASIC21.1■□□□□ 0.97
SMARCA1P28370 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.1■□□□□ 0.97
SMARCA1P28370 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.1■□□□□ 0.97
SMARCA1P28370 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMARCA1P28370 ESPNP-201ENST00000270691 2015 ntBASIC21.1■□□□□ 0.97
SMARCA1P28370 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SMARCA1P28370 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SMARCA1P28370 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.1■□□□□ 0.97
SMARCA1P28370 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.1■□□□□ 0.97
SMARCA1P28370 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.09■□□□□ 0.97
SMARCA1P28370 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
SMARCA1P28370 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.09■□□□□ 0.97
SMARCA1P28370 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMARCA1P28370 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.09■□□□□ 0.97
SMARCA1P28370 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.09■□□□□ 0.97
SMARCA1P28370 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms