Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 BX276092.5-203ENST00000456199 560 ntBASIC19.41■□□□□ 0.7
BDNFP23560 AP003733.1-201ENST00000491725 852 ntBASIC19.41■□□□□ 0.7
BDNFP23560 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
BDNFP23560 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 AC024563.2-201ENST00000603282 481 ntBASIC19.41■□□□□ 0.7
BDNFP23560 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.41■□□□□ 0.7
BDNFP23560 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.41■□□□□ 0.7
BDNFP23560 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.41■□□□□ 0.7
BDNFP23560 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
BDNFP23560 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BDNFP23560 SDHAP2-201ENST00000455183 2001 ntBASIC19.41■□□□□ 0.7
BDNFP23560 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 AC098818.2-201ENST00000564925 2320 ntBASIC19.4■□□□□ 0.7
BDNFP23560 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 TSPY22P-201ENST00000427496 604 ntBASIC19.4■□□□□ 0.7
BDNFP23560 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.4■□□□□ 0.7
BDNFP23560 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.4■□□□□ 0.7
BDNFP23560 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 AL121672.3-201ENST00000608644 468 ntBASIC19.4■□□□□ 0.7
BDNFP23560 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.4■□□□□ 0.7
BDNFP23560 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 AC016734.2-201ENST00000624325 1377 ntBASIC19.4■□□□□ 0.7
BDNFP23560 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BDNFP23560 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BDNFP23560 Z83836.1-201ENST00000624605 1642 ntBASIC19.4■□□□□ 0.7
BDNFP23560 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
BDNFP23560 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
BDNFP23560 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.39■□□□□ 0.7
BDNFP23560 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.39■□□□□ 0.7
BDNFP23560 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
BDNFP23560 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.39■□□□□ 0.7
BDNFP23560 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
BDNFP23560 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.39■□□□□ 0.69
BDNFP23560 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
BDNFP23560 KRT8P26-201ENST00000534154 1276 ntBASIC19.39■□□□□ 0.69
BDNFP23560 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.39■□□□□ 0.69
BDNFP23560 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.39■□□□□ 0.69
BDNFP23560 AC005332.3-201ENST00000589904 676 ntBASIC19.39■□□□□ 0.69
BDNFP23560 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.39■□□□□ 0.69
BDNFP23560 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
BDNFP23560 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.39■□□□□ 0.69
BDNFP23560 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
BDNFP23560 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 AC018445.3-201ENST00000624177 1945 ntBASIC19.39■□□□□ 0.69
BDNFP23560 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
BDNFP23560 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BDNFP23560 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
BDNFP23560 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
BDNFP23560 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.38■□□□□ 0.69
BDNFP23560 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
BDNFP23560 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms