Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB1P09429 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
HMGB1P09429 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB1P09429 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB1P09429 AC010240.3-201ENST00000607688 395 ntBASIC21.76■■□□□ 1.07
HMGB1P09429 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
HMGB1P09429 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGB1P09429 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB1P09429 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
HMGB1P09429 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB1P09429 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGB1P09429 SEC1P-202ENST00000473944 940 ntBASIC21.75■■□□□ 1.07
HMGB1P09429 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.75■■□□□ 1.07
HMGB1P09429 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 AC073912.3-201ENST00000624414 853 ntBASIC21.75■■□□□ 1.07
HMGB1P09429 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HMGB1P09429 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB1P09429 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGB1P09429 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB1P09429 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGB1P09429 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
HMGB1P09429 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB1P09429 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB1P09429 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB1P09429 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.74■■□□□ 1.07
HMGB1P09429 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
HMGB1P09429 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HMGB1P09429 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
HMGB1P09429 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGB1P09429 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
HMGB1P09429 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
HMGB1P09429 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB1P09429 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB1P09429 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.73■■□□□ 1.07
HMGB1P09429 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.73■■□□□ 1.07
HMGB1P09429 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 AL138966.2-201ENST00000621997 464 ntBASIC21.73■■□□□ 1.07
HMGB1P09429 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms