Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PRKNO60260 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PRKNO60260 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
PRKNO60260 AC093525.10-201ENST00000625130 1569 ntBASIC17.16■□□□□ 0.34
PRKNO60260 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.16■□□□□ 0.34
PRKNO60260 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PRKNO60260 LINC01311-201ENST00000565162 1445 ntBASIC17.16■□□□□ 0.34
PRKNO60260 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.16■□□□□ 0.34
PRKNO60260 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.16■□□□□ 0.34
PRKNO60260 SPDYE13P-201ENST00000445314 798 ntBASIC17.16■□□□□ 0.34
PRKNO60260 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.16■□□□□ 0.34
PRKNO60260 AC034232.1-201ENST00000506026 1064 ntBASIC17.16■□□□□ 0.34
PRKNO60260 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.16■□□□□ 0.34
PRKNO60260 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
PRKNO60260 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.16■□□□□ 0.34
PRKNO60260 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
PRKNO60260 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.16■□□□□ 0.34
PRKNO60260 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.16■□□□□ 0.34
PRKNO60260 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PRKNO60260 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PRKNO60260 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.16■□□□□ 0.34
PRKNO60260 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 FAM86EP-206ENST00000510506 987 ntBASIC17.15■□□□□ 0.34
PRKNO60260 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.15■□□□□ 0.34
PRKNO60260 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.15■□□□□ 0.34
PRKNO60260 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
PRKNO60260 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
PRKNO60260 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PRKNO60260 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PRKNO60260 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
PRKNO60260 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.14■□□□□ 0.34
PRKNO60260 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
PRKNO60260 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PRKNO60260 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PRKNO60260 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PRKNO60260 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PRKNO60260 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PRKNO60260 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 HBZP1-201ENST00000354915 429 ntBASIC17.14■□□□□ 0.33
PRKNO60260 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 KRT18P41-201ENST00000518924 1277 ntBASIC17.14■□□□□ 0.33
PRKNO60260 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.14■□□□□ 0.33
PRKNO60260 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.14■□□□□ 0.33
PRKNO60260 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.14■□□□□ 0.33
PRKNO60260 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.14■□□□□ 0.33
PRKNO60260 AL358472.4-201ENST00000633140 710 ntBASIC17.14■□□□□ 0.33
PRKNO60260 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PRKNO60260 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms