Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.77■□□□□ 0.6
HOXC11O43248 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.77■□□□□ 0.6
HOXC11O43248 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXC11O43248 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC11O43248 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.77■□□□□ 0.6
HOXC11O43248 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC11O43248 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC11O43248 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC11O43248 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.77■□□□□ 0.59
HOXC11O43248 MYLKP1-201ENST00000509077 1580 ntBASIC18.76■□□□□ 0.59
HOXC11O43248 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
HOXC11O43248 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 LINC00167-201ENST00000530583 1419 ntBASIC18.76■□□□□ 0.59
HOXC11O43248 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC11O43248 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC11O43248 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC11O43248 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.76■□□□□ 0.59
HOXC11O43248 IGHV3-47-201ENST00000425060 335 ntBASIC18.76■□□□□ 0.59
HOXC11O43248 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC11O43248 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 VENTXP7-201ENST00000475503 772 ntBASIC18.76■□□□□ 0.59
HOXC11O43248 AC113404.2-201ENST00000507884 177 ntBASIC18.76■□□□□ 0.59
HOXC11O43248 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.76■□□□□ 0.59
HOXC11O43248 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.76■□□□□ 0.59
HOXC11O43248 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HOXC11O43248 AC004263.2-201ENST00000617183 678 ntBASIC18.76■□□□□ 0.59
HOXC11O43248 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HOXC11O43248 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HOXC11O43248 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC11O43248 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC11O43248 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
HOXC11O43248 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXC11O43248 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
HOXC11O43248 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXC11O43248 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXC11O43248 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC11O43248 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXC11O43248 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.74■□□□□ 0.59
HOXC11O43248 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC11O43248 LINC01711-201ENST00000598340 967 ntBASIC18.74■□□□□ 0.59
HOXC11O43248 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HOXC11O43248 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC11O43248 AC116562.4-201ENST00000641316 2276 ntBASIC18.74■□□□□ 0.59
HOXC11O43248 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.73■□□□□ 0.59
HOXC11O43248 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC11O43248 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC11O43248 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HOXC11O43248 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
HOXC11O43248 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms