Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN3O15551 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN3O15551 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN3O15551 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CLDN3O15551 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CLDN3O15551 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.14■□□□□ 0.81
CLDN3O15551 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 AL138781.2-201ENST00000617896 1843 ntBASIC20.14■□□□□ 0.81
CLDN3O15551 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 HBZP1-201ENST00000354915 429 ntBASIC20.14■□□□□ 0.81
CLDN3O15551 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.14■□□□□ 0.81
CLDN3O15551 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.14■□□□□ 0.81
CLDN3O15551 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.14■□□□□ 0.81
CLDN3O15551 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
CLDN3O15551 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
CLDN3O15551 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CLDN3O15551 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 AC079602.3-201ENST00000623931 403 ntBASIC20.14■□□□□ 0.81
CLDN3O15551 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.14■□□□□ 0.81
CLDN3O15551 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.14■□□□□ 0.81
CLDN3O15551 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CLDN3O15551 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLDN3O15551 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.13■□□□□ 0.81
CLDN3O15551 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.13■□□□□ 0.81
CLDN3O15551 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.13■□□□□ 0.81
CLDN3O15551 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.13■□□□□ 0.81
CLDN3O15551 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.13■□□□□ 0.81
CLDN3O15551 ZNF444P1-201ENST00000559497 298 ntBASIC20.13■□□□□ 0.81
CLDN3O15551 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.13■□□□□ 0.81
CLDN3O15551 AC083849.1-201ENST00000615227 514 ntBASIC20.13■□□□□ 0.81
CLDN3O15551 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 AL121956.5-201ENST00000625261 221 ntBASIC20.13■□□□□ 0.81
CLDN3O15551 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CLDN3O15551 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.13■□□□□ 0.81
CLDN3O15551 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CLDN3O15551 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
CLDN3O15551 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN3O15551 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CLDN3O15551 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CLDN3O15551 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.12■□□□□ 0.81
CLDN3O15551 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CLDN3O15551 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.12■□□□□ 0.81
CLDN3O15551 AL391807.1-203ENST00000604392 2365 ntBASIC20.12■□□□□ 0.81
CLDN3O15551 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CLDN3O15551 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.12■□□□□ 0.81
CLDN3O15551 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 PVRIG2P-201ENST00000435460 978 ntBASIC20.12■□□□□ 0.81
CLDN3O15551 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.12■□□□□ 0.81
CLDN3O15551 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.12■□□□□ 0.81
CLDN3O15551 AL136038.4-201ENST00000603606 1261 ntBASIC20.12■□□□□ 0.81
CLDN3O15551 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.12■□□□□ 0.81
CLDN3O15551 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
CLDN3O15551 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLDN3O15551 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.12■□□□□ 0.81
CLDN3O15551 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CLDN3O15551 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLDN3O15551 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.11■□□□□ 0.81
CLDN3O15551 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLDN3O15551 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLDN3O15551 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms