Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CYP51A1P1-201ENST00000492267 1507 ntBASIC23.21■■□□□ 1.31
NPHP1O15259 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
NPHP1O15259 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.21■■□□□ 1.31
NPHP1O15259 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP1O15259 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
NPHP1O15259 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
NPHP1O15259 AC007952.6-201ENST00000573168 2673 ntBASIC23.2■■□□□ 1.3
NPHP1O15259 AC003957.1-201ENST00000625108 2673 ntBASIC23.2■■□□□ 1.3
NPHP1O15259 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.2■■□□□ 1.3
NPHP1O15259 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.2■■□□□ 1.3
NPHP1O15259 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
NPHP1O15259 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 AL353692.3-201ENST00000407031 1396 ntBASIC23.2■■□□□ 1.3
NPHP1O15259 HLA-A-201ENST00000376802 1334 ntBASIC23.2■■□□□ 1.3
NPHP1O15259 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP1O15259 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP1O15259 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP1O15259 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP1O15259 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP1O15259 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
NPHP1O15259 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.19■■□□□ 1.3
NPHP1O15259 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
NPHP1O15259 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
NPHP1O15259 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 AP000593.1-201ENST00000393668 712 ntBASIC23.19■■□□□ 1.3
NPHP1O15259 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.19■■□□□ 1.3
NPHP1O15259 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP1O15259 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.19■■□□□ 1.3
NPHP1O15259 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC23.19■■□□□ 1.3
NPHP1O15259 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP1O15259 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP1O15259 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP1O15259 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP1O15259 IRX1P1-201ENST00000438849 1838 ntBASIC23.18■■□□□ 1.3
NPHP1O15259 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 AKR1C7P-201ENST00000305623 895 ntBASIC23.18■■□□□ 1.3
NPHP1O15259 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
NPHP1O15259 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP1O15259 REEP1-209ENST00000541910 969 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP1O15259 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP1O15259 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP1O15259 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP1O15259 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.17■■□□□ 1.3
NPHP1O15259 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.17■■□□□ 1.3
NPHP1O15259 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC23.17■■□□□ 1.3
NPHP1O15259 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP1O15259 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
NPHP1O15259 TSPY12P-201ENST00000421279 868 ntBASIC23.17■■□□□ 1.3
NPHP1O15259 BET1L-206ENST00000486280 665 ntTSL 3 BASIC23.17■■□□□ 1.3
NPHP1O15259 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 BX640515.1-201ENST00000617215 977 ntBASIC23.17■■□□□ 1.3
NPHP1O15259 REXO1L6P-202ENST00000619970 1078 ntBASIC23.17■■□□□ 1.3
NPHP1O15259 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP1O15259 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP1O15259 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms