Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 KRT18P41-201ENST00000518924 1277 ntBASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
TRIM49D1C9J1S8 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM49D1C9J1S8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM49D1C9J1S8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
TRIM49D1C9J1S8 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 KSR1P1-201ENST00000446298 240 ntBASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AC008040.2-201ENST00000461049 708 ntBASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AC090192.1-201ENST00000517740 490 ntBASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AL353708.3-201ENST00000610272 989 ntBASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AC011298.2-201ENST00000617989 482 ntBASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM49D1C9J1S8 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 HLA-L-209ENST00000420110 1011 ntBASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 AL109659.2-201ENST00000606809 1674 ntBASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM49D1C9J1S8 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 RN7SL471P-201ENST00000580476 299 ntBASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms