Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
CCDC88BA6NC98 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CCDC88BA6NC98 AC099343.3-201ENST00000605834 2503 ntBASIC31.9■■■□□ 2.7
CCDC88BA6NC98 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC31.9■■■□□ 2.7
CCDC88BA6NC98 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC31.9■■■□□ 2.7
CCDC88BA6NC98 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CCDC88BA6NC98 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 BX842568.4-201ENST00000421222 227 ntBASIC31.89■■■□□ 2.7
CCDC88BA6NC98 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 AC012640.2-201ENST00000561606 901 ntBASIC31.89■■■□□ 2.7
CCDC88BA6NC98 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC31.89■■■□□ 2.7
CCDC88BA6NC98 AC009154.2-201ENST00000621177 724 ntBASIC31.89■■■□□ 2.7
CCDC88BA6NC98 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
CCDC88BA6NC98 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 AC093909.1-201ENST00000504731 1122 ntBASIC31.88■■■□□ 2.69
CCDC88BA6NC98 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC88BA6NC98 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 AP005117.1-201ENST00000584346 1413 ntBASIC31.87■■■□□ 2.69
CCDC88BA6NC98 PCDHAC2-203ENST00000615316 3011 ntBASIC31.87■■■□□ 2.69
CCDC88BA6NC98 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 MIR1233-2-201ENST00000408138 82 ntBASIC31.87■■■□□ 2.69
CCDC88BA6NC98 MIR1233-1-201ENST00000408722 82 ntBASIC31.87■■■□□ 2.69
CCDC88BA6NC98 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 CD63-204ENST00000546939 779 ntTSL 3 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CCDC88BA6NC98 PMS2P7-201ENST00000506558 1336 ntBASIC31.87■■■□□ 2.69
CCDC88BA6NC98 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 MTCL1P1-201ENST00000446207 792 ntBASIC31.86■■■□□ 2.69
CCDC88BA6NC98 AC092183.1-201ENST00000469884 875 ntBASIC31.86■■■□□ 2.69
CCDC88BA6NC98 AC009533.2-201ENST00000543664 586 ntBASIC31.86■■■□□ 2.69
CCDC88BA6NC98 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CCDC88BA6NC98 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 AC034105.1-201ENST00000563488 319 ntBASIC31.85■■■□□ 2.69
CCDC88BA6NC98 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 AC025062.2-201ENST00000605477 670 ntBASIC31.85■■■□□ 2.69
CCDC88BA6NC98 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC31.85■■■□□ 2.69
CCDC88BA6NC98 DANCR-204ENST00000444958 709 ntTSL 3 BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC31.84■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms