Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 RNPS1P1-201ENST00000507437 918 ntBASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 AC096582.2-201ENST00000510860 516 ntBASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 AC106730.1-201ENST00000566722 1090 ntBASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SNRNP40Q96DI7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
SNRNP40Q96DI7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AC132008.2-207ENST00000454517 770 ntBASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 POLD2P1-201ENST00000511220 997 ntBASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AC008608.2-201ENST00000606089 416 ntBASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AC068587.9-201ENST00000641814 219 ntBASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SNRNP40Q96DI7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 AC243591.1-201ENST00000452967 1364 ntBASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 AC114341.1-201ENST00000618070 349 ntBASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SNRNP40Q96DI7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 Z98044.1-201ENST00000632503 1764 ntBASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SNRNP40Q96DI7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms