Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 AC117947.1-201ENST00000427448 529 ntBASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 AC010240.3-201ENST00000607688 395 ntBASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM3Q8TF72 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHROOM3Q8TF72 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.83■□□□□ 0.6
SHROOM3Q8TF72 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.83■□□□□ 0.6
SHROOM3Q8TF72 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHROOM3Q8TF72 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SHROOM3Q8TF72 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AC010203.1-204ENST00000548782 407 ntBASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AL157888.1-201ENST00000631930 593 ntBASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AL024508.2-201ENST00000607749 1894 ntBASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AC135776.1-201ENST00000319817 2481 ntBASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AL441883.1-201ENST00000566170 1045 ntBASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SHROOM3Q8TF72 AC007613.1-201ENST00000572811 2597 ntBASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 AC112907.2-201ENST00000448639 330 ntBASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 AC091076.1-201ENST00000610741 619 ntBASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 BICD1-207ENST00000551848 1962 ntBASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 ATP5G1P1-201ENST00000448724 379 ntBASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.81■□□□□ 0.6
SHROOM3Q8TF72 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms