Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 AL163051.1-201ENST00000569214 1512 ntBASIC17.99■□□□□ 0.47
LMX1AQ8TE12 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 AL049812.1-201ENST00000432563 2267 ntBASIC17.99■□□□□ 0.47
LMX1AQ8TE12 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 AC138894.3-201ENST00000603787 634 ntBASIC17.99■□□□□ 0.47
LMX1AQ8TE12 AL592071.1-201ENST00000611956 408 ntBASIC17.99■□□□□ 0.47
LMX1AQ8TE12 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 FAAHP1-202ENST00000446499 1238 ntBASIC17.98■□□□□ 0.47
LMX1AQ8TE12 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 Z69720.1-201ENST00000601483 472 ntBASIC17.98■□□□□ 0.47
LMX1AQ8TE12 AC083906.6-201ENST00000641366 219 ntBASIC17.98■□□□□ 0.47
LMX1AQ8TE12 AL353692.3-201ENST00000407031 1396 ntBASIC17.98■□□□□ 0.47
LMX1AQ8TE12 AC233702.3-201ENST00000578656 1387 ntBASIC17.98■□□□□ 0.47
LMX1AQ8TE12 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1AQ8TE12 AC120498.9-201ENST00000339021 3867 ntBASIC17.98■□□□□ 0.47
LMX1AQ8TE12 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 EMBP1-201ENST00000458200 901 ntBASIC17.97■□□□□ 0.47
LMX1AQ8TE12 KRT18P31-201ENST00000506277 1292 ntBASIC17.97■□□□□ 0.47
LMX1AQ8TE12 KRT18P41-201ENST00000518924 1277 ntBASIC17.97■□□□□ 0.47
LMX1AQ8TE12 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1AQ8TE12 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 AC099336.1-202ENST00000602961 463 ntBASIC17.96■□□□□ 0.47
LMX1AQ8TE12 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LMX1AQ8TE12 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LMX1AQ8TE12 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms