Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 RN7SL510P-201ENST00000581311 263 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 GPX4-207ENST00000589115 812 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC012313.1-201ENST00000593393 3059 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC009078.2-202ENST00000463353 338 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AL157888.1-201ENST00000631930 593 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC104581.1-202ENST00000635932 2618 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AC020907.5-201ENST00000624372 1936 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 GABARAPL3-202ENST00000624044 1851 ntBASIC5.7□□□□□ -1.5
SYNE1Q8NF91 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 BET1L-206ENST00000486280 665 ntTSL 3 BASIC5.7□□□□□ -1.5
SYNE1Q8NF91 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms