Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 BCL2-203ENST00000589955 5011 ntBASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 NOC2LP2-201ENST00000407594 1944 ntBASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.33■□□□□ 0.36
CLIP4Q8N3C7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AL499627.1-201ENST00000569373 2188 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AC011270.2-201ENST00000624293 2550 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 FAM197Y1-201ENST00000421178 764 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 B3GAT3P1-201ENST00000471720 806 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AC142381.4-202ENST00000563973 229 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 CKBP1-201ENST00000565489 1086 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 MIR6786-201ENST00000616843 113 ntBASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP4Q8N3C7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 MESTP1-201ENST00000404287 994 ntBASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 FAM207BP-201ENST00000447172 505 ntBASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 AC098590.1-201ENST00000468126 897 ntBASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLIP4Q8N3C7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms