Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL121956.5-201ENST00000625261 221 ntBASIC17.09■□□□□ 0.33
RNF4P78317 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RNF4P78317 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF4P78317 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF4P78317 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF4P78317 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
RNF4P78317 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF4P78317 TNXA-203ENST00000507684 2038 ntBASIC17.08■□□□□ 0.33
RNF4P78317 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF4P78317 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF4P78317 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
RNF4P78317 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF4P78317 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF4P78317 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF4P78317 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.08■□□□□ 0.32
RNF4P78317 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF4P78317 PVRIG2P-201ENST00000435460 978 ntBASIC17.08■□□□□ 0.32
RNF4P78317 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF4P78317 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF4P78317 AL136038.4-201ENST00000603606 1261 ntBASIC17.08■□□□□ 0.32
RNF4P78317 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.08■□□□□ 0.32
RNF4P78317 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF4P78317 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF4P78317 AL391807.1-203ENST00000604392 2365 ntBASIC17.08■□□□□ 0.32
RNF4P78317 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF4P78317 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.08■□□□□ 0.32
RNF4P78317 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RNF4P78317 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF4P78317 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RNF4P78317 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF4P78317 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF4P78317 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RNF4P78317 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF4P78317 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RNF4P78317 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RNF4P78317 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.06■□□□□ 0.32
RNF4P78317 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
RNF4P78317 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
RNF4P78317 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
RNF4P78317 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNF4P78317 MIR149-201ENST00000384879 89 ntBASIC17.06■□□□□ 0.32
RNF4P78317 HLA-F-220ENST00000434407 884 ntBASIC17.06■□□□□ 0.32
RNF4P78317 FAM86EP-206ENST00000510506 987 ntBASIC17.06■□□□□ 0.32
RNF4P78317 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.06■□□□□ 0.32
RNF4P78317 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.06■□□□□ 0.32
RNF4P78317 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.06■□□□□ 0.32
RNF4P78317 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms