Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
HDAC4P56524 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.3■□□□□ 0.68
HDAC4P56524 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.3■□□□□ 0.68
HDAC4P56524 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.3■□□□□ 0.68
HDAC4P56524 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.3■□□□□ 0.68
HDAC4P56524 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.3■□□□□ 0.68
HDAC4P56524 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.3■□□□□ 0.68
HDAC4P56524 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.3■□□□□ 0.68
HDAC4P56524 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
HDAC4P56524 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
HDAC4P56524 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 KRT8P7-201ENST00000533003 1432 ntBASIC19.3■□□□□ 0.68
HDAC4P56524 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.3■□□□□ 0.68
HDAC4P56524 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HDAC4P56524 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.3■□□□□ 0.68
HDAC4P56524 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDAC4P56524 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
HDAC4P56524 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
HDAC4P56524 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
HDAC4P56524 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.29■□□□□ 0.68
HDAC4P56524 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.29■□□□□ 0.68
HDAC4P56524 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.29■□□□□ 0.68
HDAC4P56524 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.29■□□□□ 0.68
HDAC4P56524 AL512604.3-201ENST00000569583 964 ntBASIC19.29■□□□□ 0.68
HDAC4P56524 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 HCG11-201ENST00000411553 5696 ntBASIC19.29■□□□□ 0.68
HDAC4P56524 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.29■□□□□ 0.68
HDAC4P56524 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.29■□□□□ 0.68
HDAC4P56524 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HDAC4P56524 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.28■□□□□ 0.68
HDAC4P56524 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 AC112497.1-201ENST00000624824 639 ntBASIC19.28■□□□□ 0.68
HDAC4P56524 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 AC099343.3-201ENST00000605834 2503 ntBASIC19.28■□□□□ 0.68
HDAC4P56524 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HDAC4P56524 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HDAC4P56524 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HDAC4P56524 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
HDAC4P56524 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HDAC4P56524 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.27■□□□□ 0.68
HDAC4P56524 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
HDAC4P56524 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
HDAC4P56524 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.27■□□□□ 0.68
HDAC4P56524 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.27■□□□□ 0.68
HDAC4P56524 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.27■□□□□ 0.68
HDAC4P56524 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.27■□□□□ 0.68
HDAC4P56524 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
HDAC4P56524 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 AC113347.1-201ENST00000413321 391 ntBASIC19.27■□□□□ 0.68
HDAC4P56524 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HDAC4P56524 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms