Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RBM17P1-201ENST00000453646 1190 ntBASIC19.4■□□□□ 0.7
LIG3P49916 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG3P49916 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG3P49916 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.4■□□□□ 0.7
LIG3P49916 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIG3P49916 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIG3P49916 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.7
LIG3P49916 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIG3P49916 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.39■□□□□ 0.69
LIG3P49916 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 UNC93B2-201ENST00000285383 730 ntBASIC19.39■□□□□ 0.69
LIG3P49916 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 MESTP1-201ENST00000404287 994 ntBASIC19.39■□□□□ 0.69
LIG3P49916 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.39■□□□□ 0.69
LIG3P49916 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.39■□□□□ 0.69
LIG3P49916 MIR6786-201ENST00000616843 113 ntBASIC19.39■□□□□ 0.69
LIG3P49916 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 FSCN1P1-201ENST00000568912 1481 ntBASIC19.39■□□□□ 0.69
LIG3P49916 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.39■□□□□ 0.69
LIG3P49916 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LIG3P49916 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG3P49916 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
LIG3P49916 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.38■□□□□ 0.69
LIG3P49916 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
LIG3P49916 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
LIG3P49916 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.38■□□□□ 0.69
LIG3P49916 AC011506.1-201ENST00000474329 610 ntBASIC19.38■□□□□ 0.69
LIG3P49916 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
LIG3P49916 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LIG3P49916 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.38■□□□□ 0.69
LIG3P49916 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.38■□□□□ 0.69
LIG3P49916 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.38■□□□□ 0.69
LIG3P49916 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.38■□□□□ 0.69
LIG3P49916 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG3P49916 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.37■□□□□ 0.69
LIG3P49916 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIG3P49916 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.37■□□□□ 0.69
LIG3P49916 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.37■□□□□ 0.69
LIG3P49916 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.37■□□□□ 0.69
LIG3P49916 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 B3GAT3P1-201ENST00000471720 806 ntBASIC19.37■□□□□ 0.69
LIG3P49916 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.37■□□□□ 0.69
LIG3P49916 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIG3P49916 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.37■□□□□ 0.69
LIG3P49916 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms