Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.92■□□□□ 0.3
MSX1P28360 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.92■□□□□ 0.3
MSX1P28360 MIR3180-4-201ENST00000582223 153 ntBASIC16.92■□□□□ 0.3
MSX1P28360 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.92■□□□□ 0.3
MSX1P28360 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSX1P28360 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
MSX1P28360 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.92■□□□□ 0.3
MSX1P28360 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSX1P28360 AL138781.2-201ENST00000617896 1843 ntBASIC16.91■□□□□ 0.3
MSX1P28360 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
MSX1P28360 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.91■□□□□ 0.3
MSX1P28360 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 AL671277.2-201ENST00000458060 996 ntBASIC16.91■□□□□ 0.3
MSX1P28360 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.91■□□□□ 0.3
MSX1P28360 AC104390.1-201ENST00000555663 520 ntBASIC16.91■□□□□ 0.3
MSX1P28360 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.91■□□□□ 0.3
MSX1P28360 AC140113.3-201ENST00000605663 199 ntBASIC16.91■□□□□ 0.3
MSX1P28360 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MSX1P28360 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSX1P28360 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.91■□□□□ 0.3
MSX1P28360 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.91■□□□□ 0.3
MSX1P28360 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
MSX1P28360 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.9■□□□□ 0.3
MSX1P28360 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.9■□□□□ 0.3
MSX1P28360 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.9■□□□□ 0.3
MSX1P28360 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.9■□□□□ 0.3
MSX1P28360 AL359075.1-203ENST00000462729 1002 ntBASIC16.9■□□□□ 0.3
MSX1P28360 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.9■□□□□ 0.3
MSX1P28360 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.9■□□□□ 0.3
MSX1P28360 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.9■□□□□ 0.3
MSX1P28360 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.9■□□□□ 0.3
MSX1P28360 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.9■□□□□ 0.3
MSX1P28360 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.9■□□□□ 0.3
MSX1P28360 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.9■□□□□ 0.3
MSX1P28360 AC093503.3-201ENST00000624917 2352 ntBASIC16.9■□□□□ 0.3
MSX1P28360 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 AC087289.5-201ENST00000586076 3175 ntBASIC16.9■□□□□ 0.3
MSX1P28360 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.9■□□□□ 0.3
MSX1P28360 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSX1P28360 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
MSX1P28360 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
MSX1P28360 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.89■□□□□ 0.3
MSX1P28360 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms