Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCD3P28288 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ABCD3P28288 AL138781.2-201ENST00000617896 1843 ntBASIC17.03■□□□□ 0.32
ABCD3P28288 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCD3P28288 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 WIZP1-201ENST00000531444 2299 ntBASIC17.02■□□□□ 0.32
ABCD3P28288 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.02■□□□□ 0.32
ABCD3P28288 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.02■□□□□ 0.32
ABCD3P28288 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 SPDYE15P-201ENST00000424157 909 ntBASIC17.02■□□□□ 0.32
ABCD3P28288 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
ABCD3P28288 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.02■□□□□ 0.32
ABCD3P28288 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.02■□□□□ 0.32
ABCD3P28288 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCD3P28288 AL157888.1-201ENST00000631930 593 ntBASIC17.02■□□□□ 0.32
ABCD3P28288 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCD3P28288 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ABCD3P28288 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
ABCD3P28288 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCD3P28288 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.01■□□□□ 0.31
ABCD3P28288 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
ABCD3P28288 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
ABCD3P28288 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCD3P28288 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCD3P28288 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 KRT18P38-201ENST00000449496 1282 ntBASIC17.01■□□□□ 0.31
ABCD3P28288 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCD3P28288 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.01■□□□□ 0.31
ABCD3P28288 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.01■□□□□ 0.31
ABCD3P28288 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
ABCD3P28288 AL590326.2-201ENST00000625139 305 ntBASIC17.01■□□□□ 0.31
ABCD3P28288 AC005082.1-201ENST00000413042 2259 ntBASIC17.01■□□□□ 0.31
ABCD3P28288 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ABCD3P28288 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
ABCD3P28288 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCD3P28288 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17■□□□□ 0.31
ABCD3P28288 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 AC099343.3-201ENST00000605834 2503 ntBASIC17■□□□□ 0.31
ABCD3P28288 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17■□□□□ 0.31
ABCD3P28288 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17■□□□□ 0.31
ABCD3P28288 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 MIR1224-201ENST00000408193 85 ntBASIC17■□□□□ 0.31
ABCD3P28288 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
ABCD3P28288 AC010331.1-201ENST00000611423 582 ntBASIC17■□□□□ 0.31
ABCD3P28288 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17■□□□□ 0.31
ABCD3P28288 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17■□□□□ 0.31
ABCD3P28288 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCD3P28288 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCD3P28288 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCD3P28288 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCD3P28288 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.99■□□□□ 0.31
ABCD3P28288 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCD3P28288 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCD3P28288 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCD3P28288 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCD3P28288 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms