Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.78■□□□□ 0.28
FREM3P0C091 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
FREM3P0C091 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
FREM3P0C091 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
FREM3P0C091 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FREM3P0C091 AL031432.5-201ENST00000641059 760 ntBASIC16.78■□□□□ 0.28
FREM3P0C091 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.77■□□□□ 0.28
FREM3P0C091 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
FREM3P0C091 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
FREM3P0C091 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
FREM3P0C091 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.77■□□□□ 0.28
FREM3P0C091 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.77■□□□□ 0.28
FREM3P0C091 DUSP5P1-201ENST00000441325 1139 ntBASIC16.77■□□□□ 0.28
FREM3P0C091 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.77■□□□□ 0.28
FREM3P0C091 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FREM3P0C091 AL031598.1-201ENST00000561511 1773 ntBASIC16.77■□□□□ 0.28
FREM3P0C091 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.77■□□□□ 0.28
FREM3P0C091 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FREM3P0C091 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FREM3P0C091 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FREM3P0C091 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FREM3P0C091 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FREM3P0C091 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 AL645929.1-201ENST00000420084 975 ntBASIC16.76■□□□□ 0.27
FREM3P0C091 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.76■□□□□ 0.27
FREM3P0C091 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
FREM3P0C091 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.76■□□□□ 0.27
FREM3P0C091 AC068587.9-201ENST00000641814 219 ntBASIC16.76■□□□□ 0.27
FREM3P0C091 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.76■□□□□ 0.27
FREM3P0C091 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.76■□□□□ 0.27
FREM3P0C091 AC010240.3-201ENST00000607688 395 ntBASIC16.76■□□□□ 0.27
FREM3P0C091 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
FREM3P0C091 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.76■□□□□ 0.27
FREM3P0C091 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FREM3P0C091 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
FREM3P0C091 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
FREM3P0C091 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.75■□□□□ 0.27
FREM3P0C091 AL357033.4-201ENST00000617703 1807 ntBASIC16.75■□□□□ 0.27
FREM3P0C091 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FREM3P0C091 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FREM3P0C091 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FREM3P0C091 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FREM3P0C091 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
FREM3P0C091 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
FREM3P0C091 AC093525.10-201ENST00000625130 1569 ntBASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms