Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DQA1P01909 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 ANKRD20A6P-201ENST00000618763 204 ntBASIC13.91□□□□□ -0.18
HLA-DQA1P01909 MYC-208ENST00000641036 567 ntBASIC13.91□□□□□ -0.18
HLA-DQA1P01909 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 GAS2L1P2-201ENST00000436355 1356 ntBASIC13.91□□□□□ -0.18
HLA-DQA1P01909 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DQA1P01909 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AC016769.1-201ENST00000409132 1010 ntBASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AC137761.2-201ENST00000561729 223 ntBASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AC145350.3-201ENST00000569033 163 ntBASIC13.9□□□□□ -0.18
HLA-DQA1P01909 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 MFSD11-216ENST00000590393 1141 ntBASIC13.9□□□□□ -0.18
HLA-DQA1P01909 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms