Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP4O75161 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP4O75161 LINC00565-201ENST00000562710 2331 ntBASIC25.93■■□□□ 1.74
NPHP4O75161 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP4O75161 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP4O75161 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC25.93■■□□□ 1.74
NPHP4O75161 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC25.93■■□□□ 1.74
NPHP4O75161 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC25.93■■□□□ 1.74
NPHP4O75161 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP4O75161 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP4O75161 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC25.92■■□□□ 1.74
NPHP4O75161 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP4O75161 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP4O75161 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC25.92■■□□□ 1.74
NPHP4O75161 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC25.92■■□□□ 1.74
NPHP4O75161 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC25.92■■□□□ 1.74
NPHP4O75161 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC25.92■■□□□ 1.74
NPHP4O75161 AL163051.1-201ENST00000569214 1512 ntBASIC25.92■■□□□ 1.74
NPHP4O75161 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP4O75161 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC25.92■■□□□ 1.74
NPHP4O75161 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP4O75161 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 FEM1AP3-201ENST00000403722 1741 ntBASIC25.92■■□□□ 1.74
NPHP4O75161 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC25.92■■□□□ 1.74
NPHP4O75161 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
NPHP4O75161 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC25.92■■□□□ 1.74
NPHP4O75161 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP4O75161 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP4O75161 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
NPHP4O75161 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP4O75161 MTCL1P1-201ENST00000446207 792 ntBASIC25.91■■□□□ 1.74
NPHP4O75161 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 AC108751.1-201ENST00000490852 363 ntBASIC25.91■■□□□ 1.74
NPHP4O75161 HLA-J-203ENST00000494367 1087 ntBASIC25.91■■□□□ 1.74
NPHP4O75161 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP4O75161 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP4O75161 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP4O75161 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
NPHP4O75161 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC25.91■■□□□ 1.74
NPHP4O75161 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP4O75161 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC25.9■■□□□ 1.74
NPHP4O75161 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP4O75161 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP4O75161 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP4O75161 SOD2-201ENST00000337404 991 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP4O75161 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
NPHP4O75161 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC25.9■■□□□ 1.74
NPHP4O75161 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP4O75161 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC25.9■■□□□ 1.74
NPHP4O75161 KRT18P41-201ENST00000518924 1277 ntBASIC25.9■■□□□ 1.74
NPHP4O75161 MSRA-206ENST00000521209 814 ntTSL 3 BASIC25.9■■□□□ 1.74
NPHP4O75161 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC25.9■■□□□ 1.74
NPHP4O75161 ETFA-208ENST00000559602 792 ntTSL 3 BASIC25.9■■□□□ 1.74
NPHP4O75161 AC008687.5-201ENST00000593746 558 ntBASIC25.9■■□□□ 1.74
NPHP4O75161 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC25.9■■□□□ 1.74
NPHP4O75161 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP4O75161 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP4O75161 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC25.89■■□□□ 1.74
NPHP4O75161 AC027612.4-201ENST00000605371 583 ntBASIC25.89■■□□□ 1.74
NPHP4O75161 AC009154.2-201ENST00000621177 724 ntBASIC25.89■■□□□ 1.74
NPHP4O75161 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC25.89■■□□□ 1.74
NPHP4O75161 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP4O75161 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP4O75161 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP4O75161 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP4O75161 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC25.89■■□□□ 1.73
NPHP4O75161 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP4O75161 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP4O75161 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP4O75161 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP4O75161 CTNS-203ENST00000399306 803 ntTSL 3 BASIC25.88■■□□□ 1.73
NPHP4O75161 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP4O75161 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC25.88■■□□□ 1.73
NPHP4O75161 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
NPHP4O75161 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC25.88■■□□□ 1.73
NPHP4O75161 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP4O75161 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms