Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CACNA1FO60840 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CACNA1FO60840 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CACNA1FO60840 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
CACNA1FO60840 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CACNA1FO60840 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC23.18■■□□□ 1.3
CACNA1FO60840 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.17■■□□□ 1.3
CACNA1FO60840 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.17■■□□□ 1.3
CACNA1FO60840 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.17■■□□□ 1.3
CACNA1FO60840 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC23.17■■□□□ 1.3
CACNA1FO60840 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC23.17■■□□□ 1.3
CACNA1FO60840 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.17■■□□□ 1.3
CACNA1FO60840 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.17■■□□□ 1.3
CACNA1FO60840 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.17■■□□□ 1.3
CACNA1FO60840 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CACNA1FO60840 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CACNA1FO60840 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 DUSP5P1-201ENST00000441325 1139 ntBASIC23.16■■□□□ 1.3
CACNA1FO60840 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC23.16■■□□□ 1.3
CACNA1FO60840 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC23.16■■□□□ 1.3
CACNA1FO60840 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 AC233702.3-201ENST00000578656 1387 ntBASIC23.16■■□□□ 1.3
CACNA1FO60840 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CACNA1FO60840 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CACNA1FO60840 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.16■■□□□ 1.3
CACNA1FO60840 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC23.16■■□□□ 1.3
CACNA1FO60840 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC23.16■■□□□ 1.3
CACNA1FO60840 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC23.16■■□□□ 1.3
CACNA1FO60840 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC23.16■■□□□ 1.3
CACNA1FO60840 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CACNA1FO60840 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 AC093677.2-201ENST00000600169 1863 ntBASIC23.15■■□□□ 1.3
CACNA1FO60840 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC23.15■■□□□ 1.3
CACNA1FO60840 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CACNA1FO60840 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC23.15■■□□□ 1.3
CACNA1FO60840 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.15■■□□□ 1.3
CACNA1FO60840 CDV3-207ENST00000508481 661 ntTSL 3 BASIC23.15■■□□□ 1.3
CACNA1FO60840 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC23.15■■□□□ 1.3
CACNA1FO60840 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC23.15■■□□□ 1.3
CACNA1FO60840 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.15■■□□□ 1.3
CACNA1FO60840 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.15■■□□□ 1.3
CACNA1FO60840 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC23.15■■□□□ 1.3
CACNA1FO60840 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC23.15■■□□□ 1.3
CACNA1FO60840 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CACNA1FO60840 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
CACNA1FO60840 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC23.14■■□□□ 1.3
CACNA1FO60840 AL353801.3-201ENST00000609898 542 ntBASIC23.14■■□□□ 1.3
CACNA1FO60840 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CACNA1FO60840 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.14■■□□□ 1.3
CACNA1FO60840 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CACNA1FO60840 SP100-208ENST00000427101 1922 ntTSL 2 BASIC23.14■■□□□ 1.3
CACNA1FO60840 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC23.14■■□□□ 1.29
CACNA1FO60840 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC23.14■■□□□ 1.29
CACNA1FO60840 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC23.14■■□□□ 1.29
CACNA1FO60840 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms