Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
NPHP1O15259 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.24■■□□□ 1.31
NPHP1O15259 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 AC009065.1-201ENST00000564055 1225 ntBASIC23.24■■□□□ 1.31
NPHP1O15259 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.24■■□□□ 1.31
NPHP1O15259 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC23.24■■□□□ 1.31
NPHP1O15259 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC23.24■■□□□ 1.31
NPHP1O15259 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.24■■□□□ 1.31
NPHP1O15259 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC23.24■■□□□ 1.31
NPHP1O15259 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
NPHP1O15259 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP1O15259 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.23■■□□□ 1.31
NPHP1O15259 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 AL590627.1-203ENST00000421194 1026 ntBASIC23.23■■□□□ 1.31
NPHP1O15259 SAPCD2P3-201ENST00000455031 850 ntBASIC23.23■■□□□ 1.31
NPHP1O15259 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
NPHP1O15259 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC23.23■■□□□ 1.31
NPHP1O15259 MIR3180-4-201ENST00000582223 153 ntBASIC23.23■■□□□ 1.31
NPHP1O15259 NAT14-202ENST00000587400 416 ntTSL 5 BASIC23.23■■□□□ 1.31
NPHP1O15259 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.23■■□□□ 1.31
NPHP1O15259 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP1O15259 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 KRT8P32-201ENST00000512863 1461 ntBASIC23.23■■□□□ 1.31
NPHP1O15259 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
NPHP1O15259 NSUN5P1-202ENST00000421140 1535 ntBASIC23.23■■□□□ 1.31
NPHP1O15259 NSUN5P2-203ENST00000457352 1529 ntBASIC23.23■■□□□ 1.31
NPHP1O15259 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP1O15259 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
NPHP1O15259 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
NPHP1O15259 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 FEM1AP3-201ENST00000403722 1741 ntBASIC23.22■■□□□ 1.31
NPHP1O15259 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC23.22■■□□□ 1.31
NPHP1O15259 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
NPHP1O15259 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
NPHP1O15259 IGHV3-47-201ENST00000425060 335 ntBASIC23.22■■□□□ 1.31
NPHP1O15259 FICD-205ENST00000552758 603 ntTSL 2 BASIC23.22■■□□□ 1.31
NPHP1O15259 AC011840.4-201ENST00000578471 627 ntBASIC23.22■■□□□ 1.31
NPHP1O15259 TEN1-204ENST00000588202 862 ntTSL 3 BASIC23.22■■□□□ 1.31
NPHP1O15259 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC23.22■■□□□ 1.31
NPHP1O15259 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.22■■□□□ 1.31
NPHP1O15259 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
NPHP1O15259 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
NPHP1O15259 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
NPHP1O15259 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC23.22■■□□□ 1.31
NPHP1O15259 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP1O15259 LINC01521-201ENST00000504184 1943 ntBASIC23.21■■□□□ 1.31
NPHP1O15259 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
NPHP1O15259 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP1O15259 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC23.21■■□□□ 1.31
NPHP1O15259 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP1O15259 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
NPHP1O15259 AC064862.7-201ENST00000604520 867 ntBASIC23.21■■□□□ 1.31
NPHP1O15259 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP1O15259 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP1O15259 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms