Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 MTDHP4-201ENST00000600287 670 ntBASIC31.51■■■□□ 2.63
CUX2O14529 AC092865.6-201ENST00000642101 219 ntBASIC31.51■■■□□ 2.63
CUX2O14529 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
CUX2O14529 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
CUX2O14529 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC31.5■■■□□ 2.63
CUX2O14529 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC31.5■■■□□ 2.63
CUX2O14529 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
CUX2O14529 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 AL359881.2-201ENST00000602973 570 ntBASIC31.5■■■□□ 2.63
CUX2O14529 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
CUX2O14529 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX2O14529 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 KRT18P27-201ENST00000427733 1299 ntBASIC31.49■■■□□ 2.63
CUX2O14529 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC31.49■■■□□ 2.63
CUX2O14529 CEND1P1-201ENST00000451006 455 ntBASIC31.49■■■□□ 2.63
CUX2O14529 MEG3-211ENST00000452514 461 ntTSL 3 BASIC31.49■■■□□ 2.63
CUX2O14529 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC31.49■■■□□ 2.63
CUX2O14529 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC31.49■■■□□ 2.63
CUX2O14529 ETFA-208ENST00000559602 792 ntTSL 3 BASIC31.49■■■□□ 2.63
CUX2O14529 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC31.49■■■□□ 2.63
CUX2O14529 YTHDF3-AS1-201ENST00000603538 718 ntBASIC31.49■■■□□ 2.63
CUX2O14529 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC31.49■■■□□ 2.63
CUX2O14529 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX2O14529 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CUX2O14529 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC31.48■■■□□ 2.63
CUX2O14529 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CUX2O14529 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC31.48■■■□□ 2.63
CUX2O14529 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC31.48■■■□□ 2.63
CUX2O14529 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC31.48■■■□□ 2.63
CUX2O14529 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CUX2O14529 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC31.48■■■□□ 2.63
CUX2O14529 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX2O14529 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX2O14529 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
CUX2O14529 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX2O14529 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC31.47■■■□□ 2.63
CUX2O14529 AQP6-203ENST00000551733 849 ntTSL 3 BASIC31.47■■■□□ 2.63
CUX2O14529 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC31.47■■■□□ 2.63
CUX2O14529 RNF151-202ENST00000569210 853 ntTSL 2 BASIC31.47■■■□□ 2.63
CUX2O14529 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC31.47■■■□□ 2.63
CUX2O14529 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX2O14529 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CUX2O14529 PALM-208ENST00000592155 2272 ntTSL 4 BASIC31.46■■■□□ 2.63
CUX2O14529 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
CUX2O14529 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC31.46■■■□□ 2.63
CUX2O14529 AC011467.2-201ENST00000598425 242 ntBASIC31.46■■■□□ 2.63
CUX2O14529 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
CUX2O14529 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
CUX2O14529 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX2O14529 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 AL109659.2-201ENST00000606809 1674 ntBASIC31.46■■■□□ 2.63
CUX2O14529 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CUX2O14529 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX2O14529 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX2O14529 ANKRD20A8P-203ENST00000641373 517 ntBASIC31.46■■■□□ 2.63
CUX2O14529 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX2O14529 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC31.45■■■□□ 2.63
CUX2O14529 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC31.45■■■□□ 2.63
CUX2O14529 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC31.45■■■□□ 2.63
CUX2O14529 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX2O14529 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
CUX2O14529 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CUX2O14529 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CUX2O14529 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
CUX2O14529 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC31.45■■■□□ 2.62
CUX2O14529 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
CUX2O14529 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC31.45■■■□□ 2.62
CUX2O14529 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX2O14529 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX2O14529 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC31.44■■■□□ 2.62
CUX2O14529 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX2O14529 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX2O14529 STOM-202ENST00000347359 870 ntTSL 2 BASIC31.44■■■□□ 2.62
CUX2O14529 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC31.44■■■□□ 2.62
CUX2O14529 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CUX2O14529 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
CUX2O14529 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms