Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 NOC2LP1-202ENST00000452600 2235 ntBASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 HBZP1-201ENST00000354915 429 ntBASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMX2-CTNND1H3BSU7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 SPDYE15P-201ENST00000424157 909 ntBASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 MIR4674-201ENST00000582457 87 ntBASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TMX2-CTNND1H3BSU7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 AL645929.1-201ENST00000420084 975 ntBASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 TSPY23P-201ENST00000440136 739 ntBASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC020916.1-201ENST00000587762 1774 ntBASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 CROCCP3-202ENST00000420820 1947 ntBASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMX2-CTNND1H3BSU7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms