Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15□□□□□ -0.01
FOXA2Q9Y261 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 AP000692.2-201ENST00000608391 879 ntBASIC15□□□□□ -0.01
FOXA2Q9Y261 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
FOXA2Q9Y261 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
FOXA2Q9Y261 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA2Q9Y261 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15□□□□□ -0.01
FOXA2Q9Y261 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 AL357033.4-201ENST00000617703 1807 ntBASIC14.99□□□□□ -0.01
FOXA2Q9Y261 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 SLC25A1P4-201ENST00000567977 778 ntBASIC14.99□□□□□ -0.01
FOXA2Q9Y261 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 CYGB-204ENST00000589342 815 ntTSL 3 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 SNX21-213ENST00000614929 587 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
FOXA2Q9Y261 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 RBM17P1-201ENST00000453646 1190 ntBASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AC097488.1-201ENST00000507834 756 ntBASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AL133373.2-201ENST00000623187 2828 ntBASIC14.98□□□□□ -0.01
FOXA2Q9Y261 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA2Q9Y261 AC068880.1-201ENST00000507289 2297 ntBASIC14.97□□□□□ -0.01
FOXA2Q9Y261 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA2Q9Y261 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
FOXA2Q9Y261 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA2Q9Y261 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA2Q9Y261 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA2Q9Y261 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA2Q9Y261 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms