Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MMP28Q9H239 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
MMP28Q9H239 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.34■□□□□ 0.21
MMP28Q9H239 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.34■□□□□ 0.21
MMP28Q9H239 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.34■□□□□ 0.21
MMP28Q9H239 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.34■□□□□ 0.21
MMP28Q9H239 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.34■□□□□ 0.21
MMP28Q9H239 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.34■□□□□ 0.21
MMP28Q9H239 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 AC023632.3-201ENST00000521633 145 ntBASIC16.34■□□□□ 0.21
MMP28Q9H239 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.34■□□□□ 0.21
MMP28Q9H239 MYC-209ENST00000641252 345 ntBASIC16.34■□□□□ 0.21
MMP28Q9H239 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
MMP28Q9H239 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.34■□□□□ 0.21
MMP28Q9H239 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.34■□□□□ 0.21
MMP28Q9H239 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MMP28Q9H239 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
MMP28Q9H239 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MMP28Q9H239 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.33■□□□□ 0.2
MMP28Q9H239 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
MMP28Q9H239 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.33■□□□□ 0.2
MMP28Q9H239 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
MMP28Q9H239 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.33■□□□□ 0.2
MMP28Q9H239 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.33■□□□□ 0.2
MMP28Q9H239 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC16.33■□□□□ 0.2
MMP28Q9H239 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
MMP28Q9H239 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
MMP28Q9H239 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
MMP28Q9H239 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MMP28Q9H239 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.33■□□□□ 0.2
MMP28Q9H239 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
MMP28Q9H239 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.32■□□□□ 0.2
MMP28Q9H239 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.32■□□□□ 0.2
MMP28Q9H239 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
MMP28Q9H239 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.32■□□□□ 0.2
MMP28Q9H239 ZNF815P-204ENST00000434898 1737 ntBASIC16.32■□□□□ 0.2
MMP28Q9H239 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.32■□□□□ 0.2
MMP28Q9H239 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.32■□□□□ 0.2
MMP28Q9H239 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.32■□□□□ 0.2
MMP28Q9H239 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
MMP28Q9H239 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms