Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC28BQ9BUN5 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 POM121L13P-201ENST00000422362 380 ntBASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 UNC93B4-201ENST00000505679 747 ntBASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28BQ9BUN5 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 AL356309.3-201ENST00000624132 1934 ntBASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CCDC28BQ9BUN5 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 REXO1L9P-201ENST00000604264 2108 ntBASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 MYLKP1-201ENST00000509077 1580 ntBASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 IKBKGP1-201ENST00000612193 1073 ntBASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 AC011270.2-201ENST00000624293 2550 ntBASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CCDC28BQ9BUN5 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 KRT18P41-201ENST00000518924 1277 ntBASIC18■□□□□ 0.47
CCDC28BQ9BUN5 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28BQ9BUN5 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms