Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1AQ8TE12 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 AC104819.1-201ENST00000504587 486 ntBASIC18.02■□□□□ 0.48
LMX1AQ8TE12 AC074051.2-201ENST00000565115 352 ntBASIC18.02■□□□□ 0.48
LMX1AQ8TE12 AL161938.1-201ENST00000569833 2180 ntBASIC18.02■□□□□ 0.48
LMX1AQ8TE12 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 IFNL4P1-201ENST00000607083 540 ntBASIC18.02■□□□□ 0.48
LMX1AQ8TE12 AL121772.3-201ENST00000610840 674 ntBASIC18.02■□□□□ 0.48
LMX1AQ8TE12 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.02■□□□□ 0.48
LMX1AQ8TE12 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1AQ8TE12 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AC138932.1-201ENST00000534164 6830 ntBASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 GUSBP12-201ENST00000513727 720 ntBASIC18.01■□□□□ 0.47
LMX1AQ8TE12 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AC091304.2-201ENST00000564639 760 ntBASIC18.01■□□□□ 0.47
LMX1AQ8TE12 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AC124864.1-201ENST00000623408 392 ntBASIC18.01■□□□□ 0.47
LMX1AQ8TE12 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AC073130.3-201ENST00000624389 2278 ntBASIC18.01■□□□□ 0.47
LMX1AQ8TE12 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
LMX1AQ8TE12 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18■□□□□ 0.47
LMX1AQ8TE12 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18■□□□□ 0.47
LMX1AQ8TE12 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18■□□□□ 0.47
LMX1AQ8TE12 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 LINC00167-201ENST00000530583 1419 ntBASIC18■□□□□ 0.47
LMX1AQ8TE12 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LMX1AQ8TE12 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LMX1AQ8TE12 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LMX1AQ8TE12 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 AP000593.1-201ENST00000393668 712 ntBASIC18■□□□□ 0.47
LMX1AQ8TE12 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18■□□□□ 0.47
LMX1AQ8TE12 TSPY19P-201ENST00000418461 509 ntBASIC18■□□□□ 0.47
LMX1AQ8TE12 AC246785.2-201ENST00000432512 513 ntBASIC18■□□□□ 0.47
LMX1AQ8TE12 TSPY18P-201ENST00000441642 509 ntBASIC18■□□□□ 0.47
LMX1AQ8TE12 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18■□□□□ 0.47
LMX1AQ8TE12 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18■□□□□ 0.47
LMX1AQ8TE12 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18■□□□□ 0.47
LMX1AQ8TE12 LINC01711-201ENST00000598340 967 ntBASIC18■□□□□ 0.47
LMX1AQ8TE12 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18■□□□□ 0.47
LMX1AQ8TE12 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LMX1AQ8TE12 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LMX1AQ8TE12 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18■□□□□ 0.47
LMX1AQ8TE12 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18■□□□□ 0.47
LMX1AQ8TE12 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18■□□□□ 0.47
LMX1AQ8TE12 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1AQ8TE12 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1AQ8TE12 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms