Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 AC092329.2-201ENST00000598402 547 ntBASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 AC092119.3-201ENST00000612618 583 ntBASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 AC112497.1-201ENST00000624824 639 ntBASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.9■■□□□ 1.1
NKX2-3Q8TAU0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NKX2-3Q8TAU0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
NKX2-3Q8TAU0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
NKX2-3Q8TAU0 HOXB1-202ENST00000577092 1414 ntBASIC21.89■■□□□ 1.1
NKX2-3Q8TAU0 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NKX2-3Q8TAU0 AC034236.2-201ENST00000606662 1610 ntBASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 WIZP1-201ENST00000531444 2299 ntBASIC21.89■■□□□ 1.09
NKX2-3Q8TAU0 PKD1P6-201ENST00000343738 4769 ntBASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 KRT18P41-201ENST00000518924 1277 ntBASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 AC104390.1-201ENST00000555663 520 ntBASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.88■■□□□ 1.09
NKX2-3Q8TAU0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX2-3Q8TAU0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
NKX2-3Q8TAU0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms