Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 PCDHB18P-201ENST00000524813 2368 ntBASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.8■□□□□ 0.44
CLHC1Q8NHS4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 AC099343.3-201ENST00000605834 2503 ntBASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 AC008556.1-201ENST00000610908 2040 ntBASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 CD177P1-201ENST00000606252 935 ntBASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 AC008622.2-201ENST00000617006 1229 ntBASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLHC1Q8NHS4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 AC112777.1-201ENST00000540175 1423 ntBASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLHC1Q8NHS4 AC067852.2-201ENST00000590513 2313 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 FSCN1P1-201ENST00000568912 1481 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 NOC2LP2-201ENST00000407594 1944 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 AL158047.1-201ENST00000445918 881 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 AC098590.1-201ENST00000468126 897 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 AC142381.4-202ENST00000563973 229 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 KRT8P45-201ENST00000414328 1447 ntBASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLHC1Q8NHS4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CLHC1Q8NHS4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms