Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SRP54P61011 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.25■□□□□ 0.51
SRP54P61011 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SRP54P61011 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.24■□□□□ 0.51
SRP54P61011 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.24■□□□□ 0.51
SRP54P61011 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SRP54P61011 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SRP54P61011 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.24■□□□□ 0.51
SRP54P61011 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.24■□□□□ 0.51
SRP54P61011 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.24■□□□□ 0.51
SRP54P61011 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SRP54P61011 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.24■□□□□ 0.51
SRP54P61011 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SRP54P61011 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.23■□□□□ 0.51
SRP54P61011 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SRP54P61011 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.23■□□□□ 0.51
SRP54P61011 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.23■□□□□ 0.51
SRP54P61011 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
SRP54P61011 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SRP54P61011 MIR662-201ENST00000384847 95 ntBASIC18.23■□□□□ 0.51
SRP54P61011 ATP5G2P1-201ENST00000433580 426 ntBASIC18.23■□□□□ 0.51
SRP54P61011 BX276092.5-203ENST00000456199 560 ntBASIC18.23■□□□□ 0.51
SRP54P61011 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.23■□□□□ 0.51
SRP54P61011 AL121672.3-201ENST00000608644 468 ntBASIC18.23■□□□□ 0.51
SRP54P61011 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.23■□□□□ 0.51
SRP54P61011 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.23■□□□□ 0.51
SRP54P61011 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.23■□□□□ 0.51
SRP54P61011 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SRP54P61011 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SRP54P61011 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 AC090340.1-201ENST00000620778 4980 ntBASIC18.22■□□□□ 0.51
SRP54P61011 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SRP54P61011 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.22■□□□□ 0.51
SRP54P61011 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.22■□□□□ 0.51
SRP54P61011 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.22■□□□□ 0.51
SRP54P61011 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.22■□□□□ 0.51
SRP54P61011 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 AL049812.1-201ENST00000432563 2267 ntBASIC18.22■□□□□ 0.51
SRP54P61011 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 MTMR9LP-203ENST00000426597 1545 ntBASIC18.22■□□□□ 0.51
SRP54P61011 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SRP54P61011 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.22■□□□□ 0.51
SRP54P61011 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.21■□□□□ 0.51
SRP54P61011 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SRP54P61011 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.21■□□□□ 0.51
SRP54P61011 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SRP54P61011 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SRP54P61011 KRT18P48-201ENST00000434763 852 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms