Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 KRT18P11-201ENST00000435214 1283 ntBASIC13.92□□□□□ -0.18
FOXA3P55318 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA3P55318 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA3P55318 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
FOXA3P55318 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA3P55318 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA3P55318 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
FOXA3P55318 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA3P55318 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
FOXA3P55318 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
FOXA3P55318 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 AL645608.8-201ENST00000606034 2086 ntBASIC13.91□□□□□ -0.18
FOXA3P55318 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA3P55318 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA3P55318 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA3P55318 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC13.91□□□□□ -0.18
FOXA3P55318 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA3P55318 AC069236.1-201ENST00000604339 616 ntBASIC13.91□□□□□ -0.18
FOXA3P55318 AL139246.5-201ENST00000606645 996 ntBASIC13.91□□□□□ -0.18
FOXA3P55318 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA3P55318 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA3P55318 GAS2L1P1-201ENST00000420145 1480 ntBASIC13.91□□□□□ -0.18
FOXA3P55318 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA3P55318 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
FOXA3P55318 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA3P55318 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA3P55318 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA3P55318 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA3P55318 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA3P55318 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
FOXA3P55318 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC13.9□□□□□ -0.18
FOXA3P55318 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
FOXA3P55318 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA3P55318 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA3P55318 RALB-208ENST00000631312 311 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA3P55318 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA3P55318 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.9□□□□□ -0.18
FOXA3P55318 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA3P55318 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC13.9□□□□□ -0.18
FOXA3P55318 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
FOXA3P55318 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.9□□□□□ -0.19
FOXA3P55318 AP006587.1-201ENST00000534129 1502 ntBASIC13.9□□□□□ -0.19
FOXA3P55318 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
FOXA3P55318 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms