Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.28■□□□□ 0.52
LIMK1P53667 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.28■□□□□ 0.52
LIMK1P53667 AL691403.2-201ENST00000618460 490 ntBASIC18.28■□□□□ 0.52
LIMK1P53667 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LIMK1P53667 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LIMK1P53667 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LIMK1P53667 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 NSUN5P1-202ENST00000421140 1535 ntBASIC18.28■□□□□ 0.52
LIMK1P53667 NSUN5P2-203ENST00000457352 1529 ntBASIC18.28■□□□□ 0.52
LIMK1P53667 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMK1P53667 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMK1P53667 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
LIMK1P53667 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LIMK1P53667 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
LIMK1P53667 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMK1P53667 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.27■□□□□ 0.52
LIMK1P53667 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LIMK1P53667 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.27■□□□□ 0.52
LIMK1P53667 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.27■□□□□ 0.52
LIMK1P53667 AC140113.2-201ENST00000604370 208 ntBASIC18.27■□□□□ 0.52
LIMK1P53667 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMK1P53667 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LIMK1P53667 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMK1P53667 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.27■□□□□ 0.51
LIMK1P53667 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 ZNF259P1-201ENST00000407656 1365 ntBASIC18.27■□□□□ 0.51
LIMK1P53667 AC243591.1-201ENST00000452967 1364 ntBASIC18.27■□□□□ 0.51
LIMK1P53667 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.27■□□□□ 0.51
LIMK1P53667 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIMK1P53667 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 KRT8P7-201ENST00000533003 1432 ntBASIC18.26■□□□□ 0.51
LIMK1P53667 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
LIMK1P53667 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMK1P53667 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMK1P53667 NUS1P2-201ENST00000417358 873 ntBASIC18.26■□□□□ 0.51
LIMK1P53667 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 POM121L3P-201ENST00000419331 1163 ntBASIC18.26■□□□□ 0.51
LIMK1P53667 PMS2P2-201ENST00000425039 1128 ntBASIC18.26■□□□□ 0.51
LIMK1P53667 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMK1P53667 GUSBP12-201ENST00000513727 720 ntBASIC18.26■□□□□ 0.51
LIMK1P53667 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LIMK1P53667 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LIMK1P53667 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMK1P53667 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMK1P53667 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMK1P53667 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMK1P53667 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMK1P53667 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LIMK1P53667 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LIMK1P53667 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
LIMK1P53667 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMK1P53667 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
LIMK1P53667 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.25■□□□□ 0.51
LIMK1P53667 RPL13AP23-201ENST00000480739 586 ntBASIC18.25■□□□□ 0.51
LIMK1P53667 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.25■□□□□ 0.51
LIMK1P53667 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMK1P53667 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.25■□□□□ 0.51
LIMK1P53667 AC009065.1-201ENST00000564055 1225 ntBASIC18.25■□□□□ 0.51
LIMK1P53667 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMK1P53667 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms