Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.33■□□□□ 0.2
SOX2P48431 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC16.33■□□□□ 0.2
SOX2P48431 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SOX2P48431 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SOX2P48431 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 AC133041.1-202ENST00000642053 222 ntBASIC16.33■□□□□ 0.2
SOX2P48431 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
SOX2P48431 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.33■□□□□ 0.2
SOX2P48431 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.33■□□□□ 0.2
SOX2P48431 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SOX2P48431 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SOX2P48431 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SOX2P48431 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
SOX2P48431 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX2P48431 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SOX2P48431 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
SOX2P48431 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SOX2P48431 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX2P48431 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
SOX2P48431 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX2P48431 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SOX2P48431 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 AC069152.1-201ENST00000438030 544 ntBASIC16.32■□□□□ 0.2
SOX2P48431 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX2P48431 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX2P48431 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX2P48431 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX2P48431 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX2P48431 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
SOX2P48431 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SOX2P48431 AL109923.1-201ENST00000618799 583 ntBASIC16.32■□□□□ 0.2
SOX2P48431 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SOX2P48431 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX2P48431 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX2P48431 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX2P48431 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SOX2P48431 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX2P48431 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.31■□□□□ 0.2
SOX2P48431 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.31■□□□□ 0.2
SOX2P48431 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.31■□□□□ 0.2
SOX2P48431 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SOX2P48431 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX2P48431 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX2P48431 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX2P48431 ESPNP-201ENST00000270691 2015 ntBASIC16.31■□□□□ 0.2
SOX2P48431 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX2P48431 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX2P48431 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 KRT8P11-201ENST00000409686 1436 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms