Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.42■□□□□ 0.38
SOX3P41225 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 IRX1P1-201ENST00000438849 1838 ntBASIC17.42■□□□□ 0.38
SOX3P41225 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX3P41225 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX3P41225 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX3P41225 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.41■□□□□ 0.38
SOX3P41225 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.41■□□□□ 0.38
SOX3P41225 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
SOX3P41225 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SOX3P41225 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 KRT8P45-201ENST00000414328 1447 ntBASIC17.41■□□□□ 0.38
SOX3P41225 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.41■□□□□ 0.38
SOX3P41225 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
SOX3P41225 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.41■□□□□ 0.38
SOX3P41225 MIR4674-201ENST00000582457 87 ntBASIC17.41■□□□□ 0.38
SOX3P41225 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.41■□□□□ 0.38
SOX3P41225 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SOX3P41225 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SOX3P41225 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX3P41225 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.4■□□□□ 0.38
SOX3P41225 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 AC104076.2-201ENST00000448912 469 ntBASIC17.4■□□□□ 0.38
SOX3P41225 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 AL049597.2-201ENST00000565575 961 ntBASIC17.4■□□□□ 0.38
SOX3P41225 AL512604.3-201ENST00000569583 964 ntBASIC17.4■□□□□ 0.38
SOX3P41225 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.4■□□□□ 0.38
SOX3P41225 AC006011.2-201ENST00000621313 1158 ntBASIC17.4■□□□□ 0.38
SOX3P41225 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 AC141257.4-201ENST00000634557 245 ntBASIC17.4■□□□□ 0.38
SOX3P41225 AC136944.6-201ENST00000634818 245 ntBASIC17.4■□□□□ 0.38
SOX3P41225 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SOX3P41225 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX3P41225 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.4■□□□□ 0.38
SOX3P41225 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SOX3P41225 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SOX3P41225 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.39■□□□□ 0.38
SOX3P41225 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SOX3P41225 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SOX3P41225 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SOX3P41225 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 FEM1AP3-201ENST00000403722 1741 ntBASIC17.39■□□□□ 0.37
SOX3P41225 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.39■□□□□ 0.37
SOX3P41225 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.39■□□□□ 0.37
SOX3P41225 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SOX3P41225 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms